My idea for a simple utility is one which will lock a window from input without locking the window itself. With WinLock (also on this site) clicking a locked window results in no action (other than a sound indicating that the action cannot be performed), this utility will result in, shall we say, a ghost window which will allow clicks to pass through to the window below it.
In application, this could be used with WinWarden to create an always-on-top transparent window which can be clicked through to the windows below.
I do not believe this has been suggested before, though I could be wrong.