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detect duplicates for 100% sure
rjbull:
DoubleKillerPro has plenty of other options, though it doesn't mention streams. There's a lighter free-for-personal-use version as well.
xtabber:
Unless a file is open, I don't believe streams have any bearing on its content, so they probably can be safely ignored unless you are operating in an environment where files to be compared are constantly being accessed.
I use Beyond Compare to do byte-for-byte comparisons of any two files, or all the files in two different directory trees. However, Beyond Compare does not search for duplicates.
I use TreeSize Pro to find duplicates and optionally delete them. TreeSize Pro has a number of options for comparing files, incluuding MD5 and SHA256 checksums, which I feel is more than adequate. If you don't feel that's enough, you can always check based only on size and use Beyond Compare to do a byte-for-byte comparison of all matches found.
SKA:
Check out Delete Duplicate Files (USD 19/-):
http://www.drivehq.com/web/brana/ddf.htm
Ska
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