Nice, pretty much the same for me, I'm a web developper, and use that to switch among 300 different customers... use it all day

Btw is there some way to log which commands get actually executed from an alias after user variables have been resolved?

I'm not sure i get your question... if you want to log when you switch from one project to another, you could do it yourself by adding a third command using ;;;scripttolog.ahk "switch to A"

you can use one autohotkey script which execute multiple runs
RunWait, farr.exe ....
RunWait, farr.exe ....

Do you mind posting your alias ;)

Does it work if you hide FARR, then open it again ? (without going into the dialog...) if yes...

maybe you could try
FindAndRunRobot.exe -hide
and
FindAndRunRobot.exe -search "sometext" or FindAndRunRobot.exe -show