Thank you lanux128 for helping me pick up my slack here.
First off welcome to Donation coder.com, and CircleDock's little corner of it.
The placement of the virtual folders is possible, and infinitely do-able.
Mr. Wong (VideoInPicture (aka. VIP)) has already mentioned that he is looking to work this in.
Knowing the language that CircleDock is programmed in, and the fact that it uses .NET Framework 2.0 or higher, makes this very do-able.